NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold AP72_2010_repI_A10DRAFT_1018896

Scaffold AP72_2010_repI_A10DRAFT_1018896


Overview

Basic Information
Taxon OID3300000651 Open in IMG/M
Scaffold IDAP72_2010_repI_A10DRAFT_1018896 Open in IMG/M
Source Dataset NameForest soil microbial communities from Amazon forest - Pasture72 2010 replicate I A10
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)881
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Amazon Forest, Brazil

Source Dataset Sampling Location
Location NameAmazon forest, Fazenda Nova Vida, City of Ariquemes, State of Rondonia, Brazil
CoordinatesLat. (o)-10.171667Long. (o)-62.7875Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000284Metagenome / Metatranscriptome1378Y
F000966Metagenome / Metatranscriptome819Y

Sequences

Protein IDFamilyRBSSequence
AP72_2010_repI_A10DRAFT_10188961F000966AGAAGGMPSRKFVWDPEHWRFRAEEARTVADQMTHEESRTIMRRIAMDYDRLAKLAEVQLIQEAT
AP72_2010_repI_A10DRAFT_10188962F000284N/AMKPRLGSRKMKKLMAAFALLCLSNTVLAHDIYSTLRDREGHLCCGGQDCKPVQAVVLPNGSYYLPASGETIPADMAAPSPDERFHQCIYFPMANEFDPWGGPVFEDEPKTRCFFAPMNSS
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