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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300000736 Open in IMG/M |
| Scaffold ID | JGI12547J11936_1002026 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB epilimnion July 2011 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 5727 |
| Total Scaffold Genes | 15 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 13 (86.67%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Erie, Canada | |||||||
| Coordinates | Lat. (o) | 41.77 | Long. (o) | -81.73 | Alt. (m) | Depth (m) | 5 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002269 | Metagenome / Metatranscriptome | 576 | Y |
| F007029 | Metagenome / Metatranscriptome | 359 | Y |
| F015095 | Metagenome / Metatranscriptome | 257 | Y |
| F029049 | Metagenome / Metatranscriptome | 189 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| JGI12547J11936_100202610 | F015095 | AGG | VERAQLLIGIALGVTTILGLGAGLIRHLVKFYLSELKHDNNGGHNLAGRVERIEARVDRIYEILLEDRLAK* |
| JGI12547J11936_100202611 | F002269 | AGGAG | MKEQAKAAAVSYMRAALSCVGALYLSGITDPKVLANAFIAGLIGPLLKALQPSEKQLGVGAK* |
| JGI12547J11936_10020266 | F029049 | GAGG | VAVCRVSSVAKVILDRSQEITAHRVGLERTIIRNADPTDASNYGQKYNNWHELVWQESESVGAEIAVALYYGDFAFKPAIDNGHDTADVGENIEVKWTKHANGHLILQNRGPGRPNDVAILVTGFSPCYILLGWMPVHMAKVPKYKHPYQNNYWVPRSNLFEMQYLKRSNYGV* |
| JGI12547J11936_10020268 | F007029 | AGGAG | MGFLDNYEDVNARIKRFRAEFPSGRLVAYIESFDIEKGTILVRAEAYREYEDTLPSAIDYAFGNVATYPQNMRKWMVEDTITSSYGRCIGLLTPSLEHSSRPTVQDMQKVETLPTSSDPWSTKASIEDMATMATAVLDISTQLGGELVAETPRCSHGTMVWAEGTAKATGKPWAAYKCTERIRANQCNPVWQVMTSTGWKPQV* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |