NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI12547J11936_1006112

Scaffold JGI12547J11936_1006112


Overview

Basic Information
Taxon OID3300000736 Open in IMG/M
Scaffold IDJGI12547J11936_1006112 Open in IMG/M
Source Dataset NameFreshwater microbial communities from dead zone in Lake Erie, Canada - CCB epilimnion July 2011
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3252
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (54.55%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location
Location NameLake Erie, Canada
CoordinatesLat. (o)41.77Long. (o)-81.73Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000311Metagenome / Metatranscriptome1326Y
F000450Metagenome / Metatranscriptome1126Y
F003422Metagenome / Metatranscriptome487Y

Sequences

Protein IDFamilyRBSSequence
JGI12547J11936_10061123F000450GGCGGMGDRANFGFVQPNGNTIVLYGHWAGHNMLAQLAEAAIKAQGRWSDPSYATRITISQMIGEGWAMETGWGLHVNEIADNEHKIPVIDFQQQTFSLHEEAPYADLSNKVRGMKNEAMFTQDLSNFCEKYSDQLVRV*
JGI12547J11936_10061126F000311GGAGMYFELTAPDVLSMQRAYWDAEITGLDPEAMSPLTFNVGTGSIEKVSRIRDKYNLKESYWSDKESTGY*
JGI12547J11936_10061127F003422N/AMTNELVSSKYTFVCDPNECDCLIELTSSDGFGFPSGVTELTCPCGRKTTLLSVEHATIAPTTQTKEDKMEETTAGTVNDLLTPYQPDMLVTYKKISGYSDTEFLTDKVRNIEWELHNSRTNSKIASVLTNKIASVKDIIVEAYSDSDDQETLRSIAEALEIELTRDVEWSATIEVSGTIQLDLLADSDTDIESEIYDNLYVDSQNGNIEIVDTEVCNVREN*
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