NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI12547J11936_1020535

Scaffold JGI12547J11936_1020535


Overview

Basic Information
Taxon OID3300000736 Open in IMG/M
Scaffold IDJGI12547J11936_1020535 Open in IMG/M
Source Dataset NameFreshwater microbial communities from dead zone in Lake Erie, Canada - CCB epilimnion July 2011
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1583
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location
Location NameLake Erie, Canada
CoordinatesLat. (o)41.77Long. (o)-81.73Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024040Metagenome / Metatranscriptome207Y
F032536Metagenome / Metatranscriptome179Y
F062447Metagenome / Metatranscriptome130N

Sequences

Protein IDFamilyRBSSequence
JGI12547J11936_10205352F024040GAGGMNVYVTGHNWLAKVDIDTKLIDRTDWYNEACTRAVESVLDQEEKEGVELKIQDYDDFGLGVILLTYLEKDIKKEGEHRVILTSNVLANAGRWEEYKFVKDYEEKAKEQGL*
JGI12547J11936_10205353F062447AGGAGMKHKIFWENNSRIKGIVPAEQIIKKTQTHNFPCEAVTIRMHDLNSKNPIAVAYFHGKESQHIGWGGQNHSFAETKLIVSFNKEKEEYSFNGAINSFSLQDLKEVLDSVREVLNKV*
JGI12547J11936_10205354F032536AGAAGMNQKQTLEELMRSFRFHKNPILNWFLGEVSYYSHTYLNAKWGLKNKLQKLIRGYSDSDCWNLPQSTAKFMLPRIKHLRQNYHSLANRHHLIIDNKIVPYVGKEDDFVFNTTLGCHIDKTTGLEISLDQKEYEYILDEIIFALQTIVDEDDINVSLEEVYEVYPKGFDPIKDRQMFLEKQEDGTYLVEFERKENIQPDYSKLNKAYERQRNGLMLLGLYFKDLWD*
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