Scaffold JGI12421J11937

Basic Information
Taxon OID	3300000756 Open in IMG/M
Scaffold ID	JGI12421J11937_10000474 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300000756 Open in IMG/M

Scaffold ID

JGI12421J11937_10000474 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	15618
Total Scaffold Genes	29 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (6.90%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (20.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

15618

Total Scaffold Genes

29 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (6.90%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (20.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location
Location Name	Lake Erie, Canada
Coordinates	Lat. (^o)	41.77	Long. (^o)	-81.73	Alt. (m)	Depth (m)	20
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Erie, Canada

Coordinates

Lat. (^o)

41.77

Long. (^o)

-81.73

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038206	Metagenome / Metatranscriptome	166	Y
F046328	Metagenome / Metatranscriptome	151	N
F078619	Metagenome / Metatranscriptome	116	Y
F101004	Metagenome / Metatranscriptome	102	N
F101005	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
JGI12421J11937_1000047410	F038206	AGAAGG	MFLPIVLKDKDGEYIEHLNITHITRTSFVNVRNTDAGTRIHLRTGEVLTTPVPMDIIQTEIDDCYRSAAAMIMFNILAEKAQLSKITDDVDILGGQQPEPDAL*
JGI12421J11937_1000047415	F101004	N/A	MEDIFLRLIGEGITPNSYYVLHCVKQSIIPASYISKELEVKRLISDGWLNEDLTLTNKSIIFTTEIDGFFKKSKKKTSKLLLGDNFEDSVKKYSETFPSIKLASGKYARSNSKNLENAFRWFFETYDYDWETVLLAAKKYVLEYREIDYQYMRTSQYFIRKQSSDKTWDSDLADYCEMIINKPDDEIIFIKERLF*
JGI12421J11937_1000047417	F101005	N/A	MYNRKEKEKELMEHHSKFLEKLTSGHQFTAKTAFYSKGKFGRQIQFFENELNKGTDIYIELVDIERDARGAETNMVSMFWERPLFKYRYNPYFKEEYEVKTSTNSRGEEYSAYVVPTSELVCVNKGSEEIPYNSYETQRTEEPKEQKRLSVFPDFEEEFVPKMKDIEGSDDVSAILLEIAAGFQKLAIALKNK*
JGI12421J11937_1000047419	F046328	N/A	MGLSTKDLVNENGGGGMAKTIAPGNHKLKINSITLEDFQFIDGAKHLILNVETEPIDGFEGFLIDKDDESKGRYKGQIGRVKASQYAYADGQTKSGIKIQRDRSLMMFLANLSKATGIMSWFEEQDNKFNTIEDFVRNFSNNAPLKDKYLDFCVAGKEYENKSGYTAYDMWLPKAENNKYAYGEEGSDRILKYDEAKHLKKIEVKPVDNFGDDDDEFPTPGRTSSDFSLD*
JGI12421J11937_100004744	F078619	N/A	MPDITLCHGFECPVKEKCKRFTAKPSEHWQAYFLNPPYTITDKVFECNMFWGENAEAIMQQLMGIVTGKDGEELPE*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold JGI12421J11937_10000474

Overview

Ecosystem & Geography

Associated Families

Sequences