NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI12421J11937_10000980

Scaffold JGI12421J11937_10000980


Overview

Basic Information
Taxon OID3300000756 Open in IMG/M
Scaffold IDJGI12421J11937_10000980 Open in IMG/M
Source Dataset NameFreshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11434
Total Scaffold Genes32 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)24 (75.00%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location
Location NameLake Erie, Canada
CoordinatesLat. (o)41.77Long. (o)-81.73Alt. (m)Depth (m)20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000473Metagenome / Metatranscriptome1097Y
F000671Metagenome / Metatranscriptome945Y
F001280Metagenome / Metatranscriptome732Y
F012975Metagenome / Metatranscriptome275Y
F014140Metagenome / Metatranscriptome265Y
F037227Metagenome / Metatranscriptome168Y

Sequences

Protein IDFamilyRBSSequence
JGI12421J11937_1000098017F037227AGGMANMTVLEGIIDDVATELYQKLWNAIPVEEQTEDSSKAIGLNSRETTIFVIQSFMNKFNAAAEDLKDK*
JGI12421J11937_1000098022F000671GAGGMEKILCYSCNKTKNQLSVRRSSLLPINLLMCETCTSSKFEPRWVIILAGRQSGSETVRDFVLKKRYVGKDISASELLV*
JGI12421J11937_1000098024F000473GAGGMTFIDKSKNHFKFGVNEWNGEPNKPVFYNDEMRKRVREIPKPTYDLLMDVVMYPEFLALRLYEDNFLQFDGNKKEMVIDYVSKVKRLIESYGVRCELEGAPSERLL*
JGI12421J11937_1000098026F012975AGGAMLYLTLKGVEVFMDKSKTKSQESFWNNYDLVIWKKNSGGYTDIKGMFRKDSWGTAETISVNNHGIWKLPLKYVKHFR*
JGI12421J11937_1000098029F014140AGGLGVEVEVEAFTSEDASEYIYDIFNVDDEIKKVNIISIKEK*
JGI12421J11937_100009808F001280GGCGGMCYECGCEAVGSSAGVTNIAGGILDVSTDGEAGLTLSMTATAEQRESFINE*
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