Scaffold JGI12421J11937

Basic Information
Taxon OID	3300000756 Open in IMG/M
Scaffold ID	JGI12421J11937_10004313 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300000756 Open in IMG/M

Scaffold ID

JGI12421J11937_10004313 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	5675
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	10 (83.33%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

5675

Total Scaffold Genes

12 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

10 (83.33%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (50.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location
Location Name	Lake Erie, Canada
Coordinates	Lat. (^o)	41.77	Long. (^o)	-81.73	Alt. (m)	Depth (m)	20
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Erie, Canada

Coordinates

Lat. (^o)

41.77

Long. (^o)

-81.73

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000903	Metagenome / Metatranscriptome	843	Y
F001731	Metagenome	644	Y
F001897	Metagenome / Metatranscriptome	620	Y
F002433	Metagenome / Metatranscriptome	559	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI12421J11937_1000431312	F001731	N/A	QSGVFMTLFNPVWRVTIGGVQYQTAILANLTITSGRTNIYEQANAGYTNLELINLDQSNVLIEINDLLTIELQDSTATFVPIFGGSVVDVGIAVAEVGSVDYAQRIRIVALGALARLPKALTEGVLSDDFDGNQIYTILKEVLFLSWQEVPAALTWATYDPTTQWQDAENSGLGEIDQPGNYELENRGADTIDVYSLVSALATSGLGYIYENAQGQISYADSTHRTTYLAANGYVDLTANHALASGLSIQARAGDVRNNITLRYGNNSALEVSAVDSASVGLYGQLSQIFTTTIKHAADAQDQADFYLELRAYPRFNFNNITFELTNPELDDADRDDLINVFMGMPVNIANLPLNMNSGDFLGFVEGWTFSARYNQVSVSMIVSPISFSLQAMRWNDVPVTEQWSTVNPTLDWINATIVA
JGI12421J11937_100043133	F000903	AGGAGG	MIAAISHCHDRSADHSSRIVKNLSWFEYVAQMAESMLAEMVVAKRLGYDYQPGITWDKSKADVGEHIEVKWSANPNSNLWIQESDREDRDIAVLVTGNAPKMHIVGWMPVAVAKRPRYKNTNQNNWTVPQVNLQPIETLIRSNYAHPSI*
JGI12421J11937_100043135	F001897	AGGCGG	MAFMDNYEGNKERTDRWIATYPQGRLETHIIEFNAEKGYVLVQAKAWRNQTEIDPAGIDYAHGFLAAYSDKMRRWMVEDTCTSALMRVMALVMGGTEKATKEVMASVKTETPAADHDYWTTKFGEVPSYKTREEAEEADETGWAVNGVPMCAHGSMRWNQSKPDAPKAWAGYFCSEKIKEKQCKPTWYVLTSDGTFKPQV*
JGI12421J11937_100043137	F002433	N/A	VSVGEWTAVGGLVIAVLTAIYSSMRFMVKSIMRELQPNGGNSLKDQVSRIENRLDQLLLEIALKK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold JGI12421J11937_10004313

Overview

Ecosystem & Geography

Associated Families

Sequences