Scaffold JGI12421J11937

Basic Information
Taxon OID	3300000756 Open in IMG/M
Scaffold ID	JGI12421J11937_10005609 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300000756 Open in IMG/M

Scaffold ID

JGI12421J11937_10005609 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	4957
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (62.50%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

4957

Total Scaffold Genes

8 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

5 (62.50%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location
Location Name	Lake Erie, Canada
Coordinates	Lat. (^o)	41.77	Long. (^o)	-81.73	Alt. (m)	Depth (m)	20
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Erie, Canada

Coordinates

Lat. (^o)

41.77

Long. (^o)

-81.73

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000258	Metagenome / Metatranscriptome	1443	Y
F001106	Metagenome / Metatranscriptome	776	Y
F035307	Metagenome	172	Y
F056615	Metagenome / Metatranscriptome	137	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI12421J11937_100056093	F000258	GGAGG	MTDYKADIMIDLRKYLWNQLTANSIFTATDYYSDNIGQEIVPIIPVQQSPEMNQFLSGKKHIVYDKIGLSYEDNWAICCEQILFTIYSTDVSEINEIRNLMTDLFRRMDDSARDANAYSGISSKFKFFSIFVADISPTAPSEELSGFLSSDVILEVKYARHLGTTGRFL*
JGI12421J11937_100056094	F035307	GGA	LDNSALLVTAASGLQKGMAGTSGKVLKDSTVAQISAAIYYQAQVVSKITTNKQFQKKFQSVIFKQIEEDFGLYVDSQSRMNPKSLHHMYEWKKTGNKTSRLFKLKVLSTDGLSFKITSNFLPSKSSVPNEFGKRRHVFINKASVMEAGMPLVIRPKFAERLVFETATGVVYMPKGASVTVTRPGGGKATGRFKIAYAQFFTGNLVNVSIKRSGFQQIFNSSLTKSMKLPSDVRKVKYSFNANTLNMHAESAIASAFGGAV*
JGI12421J11937_100056095	F056615	N/A	MYDLVDSVMPLLMDVYKQFDLQDADTGSIKKEWQFEKTVACSAKGNISNSSSSTAGDKQTFSNKYKNEETLQIRTIGKITLREKITNIRDQEGTVIWEELNFPSNTPTVFEVMGITPMIDPLGGVLAYNATVKRSENQTIGQ*
JGI12421J11937_100056097	F001106	AGGAG	MSFETLKVAELRKVAEDFAVDTDGLKNKADIIAALTEEGVTWSVYQKTIKDIEKAEDEFSEDAEEILPRFNPDAQPENTMLVRMTRENHRYDILNYTFTKEHPFVAMTSENAQEIFDKEEGFRLATPKEVQEYYA*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold JGI12421J11937_10005609

Overview

Ecosystem & Geography

Associated Families

Sequences