NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold BS_KBA_SWE02_21mDRAFT_10004879

Scaffold BS_KBA_SWE02_21mDRAFT_10004879


Overview

Basic Information
Taxon OID3300000792 Open in IMG/M
Scaffold IDBS_KBA_SWE02_21mDRAFT_10004879 Open in IMG/M
Source Dataset NameMarine microbial communities from chronically polluted sediments in the Baltic Sea - site KBA sample SWE 02_21m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)4811
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira oceanica(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Sediment → Marine → Marine Microbial Communities From Chronically Polluted Sediments In Four Geographic Locations

Source Dataset Sampling Location
Location NameKBA site, Vaertahamnen, Baltic Sea, Sweden
CoordinatesLat. (o)59.363333Long. (o)18.119167Alt. (m)Depth (m)21
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F082695Metagenome / Metatranscriptome113N

Sequences

Protein IDFamilyRBSSequence
BS_KBA_SWE02_21mDRAFT_100048792F082695N/AMNRSVANRTITKPEAMCELGQLPMVICSESIETVSITGSIRCTSDGATSTMLSQYKNRLDTQEHLSLHEFYHAKKNKQSTATATRREFIPHYVGGRGQPVYPVTDTKQSISYARSEILKHMPWSQKNPMPNDCNWVAIFKEFLQDPSCPAGVRLGFERAKLRYELRGKGIQEAFQPDTEHSNATDDLDDDEIGDVIALTESLGYTEDELDKMEDGGFCIGRDYDWGRRVYTVSNTCIVNQPTCCNQFQSHQHC*
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