Scaffold BS_KBA_SWE02_21mDRAFT_10025360

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold BS_KBA_SWE02_21mDRAFT_10025360

Scaffold BS_KBA_SWE02_21mDRAFT_10025360

Overview

Basic Information
Taxon OID	3300000792 Open in IMG/M
Scaffold ID	BS_KBA_SWE02_21mDRAFT_10025360 Open in IMG/M
Source Dataset Name	Marine microbial communities from chronically polluted sediments in the Baltic Sea - site KBA sample SWE 02_21m
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Scaffold Components
Scaffold Length (bps)	1870
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Sediment → Marine → Marine Microbial Communities From Chronically Polluted Sediments In Four Geographic Locations

Source Dataset Sampling Location
Location Name	KBA site, Vaertahamnen, Baltic Sea, Sweden
Coordinates	Lat. (^o)	59.363333	Long. (^o)	18.119167	Alt. (m)		Depth (m)	21
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F047753	Metagenome / Metatranscriptome	149	N

Sequences

Protein ID	Family	RBS	Sequence
BS_KBA_SWE02_21mDRAFT_100253602	F047753	GGAGG	MKKIIGILEELRVDDTWLRVAPFALAGCRKESYGKLTRLCRRKETLMAVVVAGVIGLYSAKKHIGLCKKAVKAGKNAYRDSDRELNKYLDAIWRVYILDNSIDKQRLIEKAIGCLSGKLDQELSHSLTEAKKEYKAMIQQIIGAVQADTGHSENAVHGYLAAFLNSIGCTTLGGKRFTRQSISK*

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