NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold BS_KBA_SWE02_21mDRAFT_10096736

Scaffold BS_KBA_SWE02_21mDRAFT_10096736


Overview

Basic Information
Taxon OID3300000792 Open in IMG/M
Scaffold IDBS_KBA_SWE02_21mDRAFT_10096736 Open in IMG/M
Source Dataset NameMarine microbial communities from chronically polluted sediments in the Baltic Sea - site KBA sample SWE 02_21m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)755
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Sediment → Marine → Marine Microbial Communities From Chronically Polluted Sediments In Four Geographic Locations

Source Dataset Sampling Location
Location NameKBA site, Vaertahamnen, Baltic Sea, Sweden
CoordinatesLat. (o)59.363333Long. (o)18.119167Alt. (m)Depth (m)21
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000973Metagenome / Metatranscriptome817Y
F012964Metagenome275Y

Sequences

Protein IDFamilyRBSSequence
BS_KBA_SWE02_21mDRAFT_100967361F012964GGAMEEQIPPSQPPMPQTLEGQITPEMLAQMKARARELAIQQTIAQQAVIPQQQPQVVYVRRNLTVAEILLVILLSCGIVTGIQWSWNIVTNVLPRVEI
BS_KBA_SWE02_21mDRAFT_100967362F000973AGGAMQYGLRKSLEDIAYELKGIKNILGSMWHSRYSTGETDALNPEAFADEYISTEECGKRLGVSDQTIRNWISIGRKTPDKGWVEGIHYVNVSPDVHRKAVLRIPWNRLIQSFAKNEELDLRNLRGNYRQYENKQEFLE*
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