NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI12396J12026_1046026

Scaffold JGI12396J12026_1046026


Overview

Basic Information
Taxon OID3300000827 Open in IMG/M
Scaffold IDJGI12396J12026_1046026 Open in IMG/M
Source Dataset NameSoil microbial communities from Moab, Utah, sample - Soil Crust Prior wet up (biological replicate B) 0B (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1043
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera → unclassified Nitrososphaera → Nitrososphaera sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Sand → Desert → Soil → Soil Microbial Communities From Four Geographically Distinct Crusts In The Colorado Plateau And Sonoran Desert

Source Dataset Sampling Location
Location NameMoab, Utah
CoordinatesLat. (o)38.714694Long. (o)-109.692944Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012744Metagenome / Metatranscriptome277Y

Sequences

Protein IDFamilyRBSSequence
JGI12396J12026_10460261F012744GGAGMSYTDDCPAGRSQHLTRGVFFKNHVAKVYVFDRIRHGTAMEILSRASAACRFESPDTAVFEHQWREYFGLPVMSLSAAANYYGLKVSELEPHIRKKNTYAGGLFESGMLVLRDAALESARLMGHTAGIQQGFVLLPPRAVLNLCLYLRPVPAVAATVNAFWDYVVAQKLHESTSADWYYTSSQHVEIECERIEEQRLLECLAEAKERKLYPYIQHFGRQTCFEAWARLFSYEGEFPPPRGSFYVERQDWYDRVSHISLWR*
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