NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI12396J12026_1139133

Scaffold JGI12396J12026_1139133


Overview

Basic Information
Taxon OID3300000827 Open in IMG/M
Scaffold IDJGI12396J12026_1139133 Open in IMG/M
Source Dataset NameSoil microbial communities from Moab, Utah, sample - Soil Crust Prior wet up (biological replicate B) 0B (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1644
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Sand → Desert → Soil → Soil Microbial Communities From Four Geographically Distinct Crusts In The Colorado Plateau And Sonoran Desert

Source Dataset Sampling Location
Location NameMoab, Utah
CoordinatesLat. (o)38.714694Long. (o)-109.692944Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F048032Metagenome / Metatranscriptome148Y

Sequences

Protein IDFamilyRBSSequence
JGI12396J12026_11391332F048032GAGGMDTKKQSQKPAKTLPVTQLPIVTLTEKDMSSVNGGGSYAWAG*
JGI12396J12026_11391333F048032GGAGGMDTKKQDQKQGKTIPLTQLPIVTLTEKDMSSVNGGRIGMPGGD*
JGI12396J12026_11391335F048032GGAGGMDTKKQDQKPAKTLPLTQLPIVTLTPKDMSSVNGGSSYAWAG*
JGI12396J12026_11391336F048032GGAGGMDTKKQDQKLAKTLPLTQLPIVTLTDKDMSSVNGGGYNQ*
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