Scaffold JGI12467J12023_1144979

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold JGI12467J12023_1144979

Scaffold JGI12467J12023_1144979

Overview

Basic Information
Taxon OID	3300000828 Open in IMG/M
Scaffold ID	JGI12467J12023_1144979 Open in IMG/M
Source Dataset Name	Soil microbial communities from Moab, Utah, sample - Soil Crust Dry out, 3 days (biological replicate C) D5C (Metagenome Metatranscriptome)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	800
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera → unclassified Nitrososphaera → Nitrososphaera sp.	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Sand → Desert → Soil → Soil Microbial Communities From Four Geographically Distinct Crusts In The Colorado Plateau And Sonoran Desert

Source Dataset Sampling Location
Location Name	Moab, Utah
Coordinates	Lat. (^o)	38.714694	Long. (^o)	-109.692944	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F012744	Metagenome / Metatranscriptome	277	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI12467J12023_11449791	F012744	GGAG	MSYRDDCPAGRSQFLTRGSLFKIHAAKVYVLDRIRHGTALEILSRASAACQFESSHTTVSDYQWREYFGLPVMSLSAAANYYGLNVSEIEHHIRKKNTYAGGLFESGMLVLRDAALESARLMGHTAEIQQGCVLLPPRAVLSLCLSLRPVPAVAATVNAFWDYVVAEKLHESSSADWHYTSSQHVEIECERIEEQKQLECLAIAKERKLYPYIQHFGHQNCFEAWARLFSYEGEFPPPRGSFYVEAQN

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