NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold AP72_2010_repI_A100DRAFT_1000767

Scaffold AP72_2010_repI_A100DRAFT_1000767


Overview

Basic Information
Taxon OID3300000837 Open in IMG/M
Scaffold IDAP72_2010_repI_A100DRAFT_1000767 Open in IMG/M
Source Dataset NameForest soil microbial communities from Amazon forest - Pasture72 2010 replicate I A100
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)5126
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Amazon Forest, Brazil

Source Dataset Sampling Location
Location NameAmazon forest, Fazenda Nova Vida, City of Ariquemes, State of Rondonia, Brazil
CoordinatesLat. (o)-10.171667Long. (o)-62.7875Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F047849Metagenome / Metatranscriptome149N

Sequences

Protein IDFamilyRBSSequence
AP72_2010_repI_A100DRAFT_10007677F047849GGAGMTSISAAKLLTRFENYLAGVFHPIPEEQVIAGAIQSFYGWVFPFLRNAFICGVLKYLADASGSMTLQALAIIAYVVLVGYCFSYIIAGALTPFHFVKYRRLGVLLDALVTLAVLSSLGYAIFLGTRFAIDEIARGHVASRSIAPHSSPGP*
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