NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI10213J12805_10007397

Scaffold JGI10213J12805_10007397


Overview

Basic Information
Taxon OID3300000858 Open in IMG/M
Scaffold IDJGI10213J12805_10007397 Open in IMG/M
Source Dataset NameSoil microbial communities from Great Prairies - Wisconsin Native Prairie soil
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1831
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Soil Microbial Communities From Great Prairies (Kansas, Wisconsin And Iowa)

Source Dataset Sampling Location
Location NameWisconsin, USA
CoordinatesLat. (o)43.312222Long. (o)-89.370833Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000535Metagenome / Metatranscriptome1044Y
F016999Metagenome / Metatranscriptome243Y
F059688Metagenome / Metatranscriptome133Y

Sequences

Protein IDFamilyRBSSequence
JGI10213J12805_100073972F059688N/AMPRKNLTSARKAATLRSWRVSILRAQAQYRGDVKAPDQRSAEAEAVRQFNLSDEERKHLVVQERP*
JGI10213J12805_100073974F000535AGGAMKDRTYFAFRIDMWTDDGENIVEHLAGVADFQVALATYKAACERWPTASITLRQDARVIEDSRSTRVALRWCDKGRQGGL*
JGI10213J12805_100073976F016999AGGAGMNPKAEDFICFYRDAVIAGHDAPAAETMRRFNLSRDYTVRLLNEAIAGCEGQDIRNWDRR
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