NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold OpTDRAFT_1009419

Scaffold OpTDRAFT_1009419


Overview

Basic Information
Taxon OID3300000864 Open in IMG/M
Scaffold IDOpTDRAFT_1009419 Open in IMG/M
Source Dataset NameMarine plume microbial communities from the Columbia River - Metatranscriptome 25 PSU
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Maryland
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1298
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota(Source: Euk_MAG)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Freshwater And Marine → Freshwater And Marine Microbial Communities From The Columbia River, Usa, Of Estuaries And Plumes Across Salinity Gradients

Source Dataset Sampling Location
Location NameColumbia River plume, coastal ocean
CoordinatesLat. (o)46.235Long. (o)-124.16Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F043755Metagenome / Metatranscriptome155Y

Sequences

Protein IDFamilyRBSSequence
OpTDRAFT_10094192F043755N/AMLRTSRKLTMQSNNSASLHLFVFFGSELGLAVGDVNVQSGGSFNDGGPFLGADTGGDFASPGSVRHHQAVKFVQVVNEKLLETHLVSAGVSGVFVGSVTDAWVASLTTESSSEGTIDTLWSSP*RVSDSNESIDLVSGELLVSLLQERVLANSFLCHF*
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