NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold EsTDRAFT_1074384

Scaffold EsTDRAFT_1074384


Overview

Basic Information
Taxon OID3300000867 Open in IMG/M
Scaffold IDEsTDRAFT_1074384 Open in IMG/M
Source Dataset NameEstuary microbial communities from the Columbia River - metatranscriptome 5 PSU
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Maryland
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)841
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → unclassified Chitinophagaceae → Chitinophagaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Freshwater And Marine → Freshwater And Marine Microbial Communities From The Columbia River, Usa, Of Estuaries And Plumes Across Salinity Gradients

Source Dataset Sampling Location
Location NameColumbia River estuary
CoordinatesLat. (o)46.235Long. (o)-123.91Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F034105Metagenome175Y

Sequences

Protein IDFamilyRBSSequence
EsTDRAFT_10743841F034105N/AMNQETKQLPVPSLTAEQVQVLMNYANEQLPTKYGKEILGFIEKVAIELDKSQVTEAIA

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