Scaffold AL20A1W_1074477

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold AL20A1W_1074477

Scaffold AL20A1W_1074477

Overview

Basic Information
Taxon OID	3300000880 Open in IMG/M
Scaffold ID	AL20A1W_1074477 Open in IMG/M
Source Dataset Name	Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A35-65cm-20A)- 1 week illumina
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Tennessee
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	4135
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatimonas → Gemmatimonas aurantiaca	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost → Permafrost And Active Layer Microbial Communities From Mcgill Arctic Research Station (Mars)

Source Dataset Sampling Location
Location Name	Axel Heiberg Island, Nunavut, Canada
Coordinates	Lat. (^o)	79.26	Long. (^o)	-90.46	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F046558	Metagenome	151	Y

Sequences

Protein ID	Family	RBS	Sequence
AL20A1W_10744771	F046558	N/A	ILYQISRSARIESNSDSGSHQEIATNTTRESLSLERLGDTVHFTAAVDTFSTTTQGTIGPTQFVQLPVQLSGTLMGDSLIVETDSVAEKCSSVSSALLADLHNLLIRFPTPVSQGSGWRNSVELKACQGMIPTTSRITRSYIVSGEIAYQGDLVLVVQRTDSIQAHGEGAQQQHPLTLDAKGTGNAVYYVSPRDGRIVRLNTEQDLDLAITVSGKIHRFKQTSKQDFVAVR*

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