Scaffold JGI10215J12807_1294029

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold JGI10215J12807_1294029

Scaffold JGI10215J12807_1294029

Overview

Basic Information
Taxon OID	3300000881 Open in IMG/M
Scaffold ID	JGI10215J12807_1294029 Open in IMG/M
Source Dataset Name	Soil microbial communities from Great Prairies - Wisconsin Restored Prairie soil
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1241
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Soil Microbial Communities From Great Prairies (Kansas, Wisconsin And Iowa)

Source Dataset Sampling Location
Location Name	Wisconsin, USA
Coordinates	Lat. (^o)	43.303611	Long. (^o)	-89.332778	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F090446	Metagenome / Metatranscriptome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI10215J12807_12940291	F090446	N/A	AHDGDYDRLVLADLSEPSNPTSRRIASVRNAYDLGRPSLRGGQLAWHRIGRHGSAVFVQNVTTNKRRAIKKTDVWQESNPALTTKRIVWVEQRPQGSYLRMRWLGSARTKTLMHVKGRKTFLWTTALSGRTAYVTKWTPSTRKAVVLRVNF*

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