Basic Information | |
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Taxon OID | 3300000882 Open in IMG/M |
Scaffold ID | FwDRAFT_10001873 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from the Columbia River |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | University of Maryland |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 4792 |
Total Scaffold Genes | 8 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (62.50%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater And Marine → Freshwater And Marine Microbial Communities From The Columbia River, Usa, Of Estuaries And Plumes Across Salinity Gradients |
Source Dataset Sampling Location | ||||||||
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Location Name | Columbia River freshwater tidal region | |||||||
Coordinates | Lat. (o) | 46.18 | Long. (o) | -123.18 | Alt. (m) | Depth (m) | 1 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000258 | Metagenome / Metatranscriptome | 1443 | Y |
F001229 | Metagenome / Metatranscriptome | 741 | Y |
F001900 | Metagenome / Metatranscriptome | 620 | Y |
F005054 | Metagenome / Metatranscriptome | 413 | Y |
Protein ID | Family | RBS | Sequence |
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FwDRAFT_100018732 | F000258 | GGAGG | MANYKLDAMLELRKYLWKELYTRNIFDEDDYWSDNLNENIIPIIPVQQAPELNQFMSGKKHIVYDKIGMSYDDNWLICCEQILFTVYSTSVADINEIRNYMTDEFRRMDESARDINRWTGLSDMFKFHSIHIADISPTAPSEELQGFFSSEIILEIKYSRDTDTNGASSTLGRFA* |
FwDRAFT_100018733 | F001900 | GGAG | LDNSGLLVQAASGLERMMHSNQKGPLRDSTVAQISAYVYYEASVMAKLTSSKKFQNSFSKLMFDQINLDFGNYIDALARSKPKSLHHVYEWKKAGNKTHRLFKLNKTTQTGLSFGINFDFLPSKTMVPSSNRRRSHMFANKASVMENGKPLVIKPKSAERLVFEMDGEVVFMPKGASVTVRRPGGSAATNQFTLAYSRFFSGRLVSDSMKRSGFQRLFNSSITRALGVPSNIKRVQYSFSANSIRAQADSALALAFGGSM* |
FwDRAFT_100018734 | F001229 | GAG | MSGIVDSVLSMNLDVYRQSEIQDPDTGAIVKEWNYYKTIACHAKGVISNSATTRSSDKQIFSNKYLNDQVIQVRTSEKLTAREKVTNIKDVEGNTIWNEINYPSETPTVFEVMGTTPMTDPFGRVIAYNSSLKRSENQQIG* |
FwDRAFT_100018735 | F005054 | N/A | MAEILVKSQSPIVHQVFWNGDIAVTDSLPIVKIYDTTLDATISPAVLPTTLLSTLTSAIDESNPGTYIVNIPYSLTGRNRTLKLQWEYSIGGTAVVRSDTVFVVTPYVDFNHVQDLGFSTDSSDPGYKSYKELLKAERYARKQIEEYTGQKFFLYDDIQVVYGYDSDTLPLPAKINALHSLTMNDTLLLDNINNINNWNFPVQISESGYGIRVNRASLVDNTVYTANGMVPPSIHDYSGLFNSGVPYKVTGRFGWSEVPDNVELAAIELIKDYFSKDTAWRNKYVKSISTFDWDFEYTGDAYTGTGNAFADNLLADYVLTIKAEII* |
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