NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold FwDRAFT_10001873

Scaffold FwDRAFT_10001873


Overview

Basic Information
Taxon OID3300000882 Open in IMG/M
Scaffold IDFwDRAFT_10001873 Open in IMG/M
Source Dataset NameFreshwater microbial communities from the Columbia River
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Maryland
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4792
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (62.50%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater And Marine → Freshwater And Marine Microbial Communities From The Columbia River, Usa, Of Estuaries And Plumes Across Salinity Gradients

Source Dataset Sampling Location
Location NameColumbia River freshwater tidal region
CoordinatesLat. (o)46.18Long. (o)-123.18Alt. (m)Depth (m)1
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000258Metagenome / Metatranscriptome1443Y
F001229Metagenome / Metatranscriptome741Y
F001900Metagenome / Metatranscriptome620Y
F005054Metagenome / Metatranscriptome413Y

Sequences

Protein IDFamilyRBSSequence
FwDRAFT_100018732F000258GGAGGMANYKLDAMLELRKYLWKELYTRNIFDEDDYWSDNLNENIIPIIPVQQAPELNQFMSGKKHIVYDKIGMSYDDNWLICCEQILFTVYSTSVADINEIRNYMTDEFRRMDESARDINRWTGLSDMFKFHSIHIADISPTAPSEELQGFFSSEIILEIKYSRDTDTNGASSTLGRFA*
FwDRAFT_100018733F001900GGAGLDNSGLLVQAASGLERMMHSNQKGPLRDSTVAQISAYVYYEASVMAKLTSSKKFQNSFSKLMFDQINLDFGNYIDALARSKPKSLHHVYEWKKAGNKTHRLFKLNKTTQTGLSFGINFDFLPSKTMVPSSNRRRSHMFANKASVMENGKPLVIKPKSAERLVFEMDGEVVFMPKGASVTVRRPGGSAATNQFTLAYSRFFSGRLVSDSMKRSGFQRLFNSSITRALGVPSNIKRVQYSFSANSIRAQADSALALAFGGSM*
FwDRAFT_100018734F001229GAGMSGIVDSVLSMNLDVYRQSEIQDPDTGAIVKEWNYYKTIACHAKGVISNSATTRSSDKQIFSNKYLNDQVIQVRTSEKLTAREKVTNIKDVEGNTIWNEINYPSETPTVFEVMGTTPMTDPFGRVIAYNSSLKRSENQQIG*
FwDRAFT_100018735F005054N/AMAEILVKSQSPIVHQVFWNGDIAVTDSLPIVKIYDTTLDATISPAVLPTTLLSTLTSAIDESNPGTYIVNIPYSLTGRNRTLKLQWEYSIGGTAVVRSDTVFVVTPYVDFNHVQDLGFSTDSSDPGYKSYKELLKAERYARKQIEEYTGQKFFLYDDIQVVYGYDSDTLPLPAKINALHSLTMNDTLLLDNINNINNWNFPVQISESGYGIRVNRASLVDNTVYTANGMVPPSIHDYSGLFNSGVPYKVTGRFGWSEVPDNVELAAIELIKDYFSKDTAWRNKYVKSISTFDWDFEYTGDAYTGTGNAFADNLLADYVLTIKAEII*

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.