NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold FwDRAFT_10015798

Scaffold FwDRAFT_10015798


Overview

Basic Information
Taxon OID3300000882 Open in IMG/M
Scaffold IDFwDRAFT_10015798 Open in IMG/M
Source Dataset NameFreshwater microbial communities from the Columbia River
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Maryland
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5382
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (75.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater And Marine → Freshwater And Marine Microbial Communities From The Columbia River, Usa, Of Estuaries And Plumes Across Salinity Gradients

Source Dataset Sampling Location
Location NameColumbia River freshwater tidal region
CoordinatesLat. (o)46.18Long. (o)-123.18Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000473Metagenome / Metatranscriptome1097Y
F000671Metagenome / Metatranscriptome945Y
F014140Metagenome / Metatranscriptome265Y
F042904Metagenome / Metatranscriptome157Y

Sequences

Protein IDFamilyRBSSequence
FwDRAFT_1001579813F042904GGAGVQGCLIWLVPLMDSKQTVLEGIIEEVATDLYNKWSAALPEHERNQEAFSALSSNAHETTFFVIQNFMDRFNQAAEELKDK*
FwDRAFT_100157985F014140AGGMKTYLIKLSVDIEIEAFNEDDAKEYLLDIFNVDDEIKKVGIVKIIEK*
FwDRAFT_100157987F000473AGGMANYLDKDKDHFKHGINHWTGEPNKPVFYNKEMSLAVRGIKKPVGNLQMDIIKYPEFLCLRLYEDNFIQFTGNKKEMVIDYLQKVKKVIESYGVRCELEGVPSRNVLGKGI*
FwDRAFT_100157988F000671AGGALEKILCYCCNKSKNKLNLKPSALLSINLLMCETCISSKIEPRWVVILAGRANGPDHVRDFILKRRYLGDEITASELII*
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