NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold EsDRAFT_10156720

Scaffold EsDRAFT_10156720


Overview

Basic Information
Taxon OID3300000883 Open in IMG/M
Scaffold IDEsDRAFT_10156720 Open in IMG/M
Source Dataset NameEstuary microbial communities from the Columbia River - 5 PSU
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Maryland
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)532
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Freshwater And Marine → Freshwater And Marine Microbial Communities From The Columbia River, Usa, Of Estuaries And Plumes Across Salinity Gradients

Source Dataset Sampling Location
Location NameColumbia River estuary
CoordinatesLat. (o)46.235Long. (o)-123.91Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029747Metagenome / Metatranscriptome187Y
F038235Metagenome166N

Sequences

Protein IDFamilyRBSSequence
EsDRAFT_101567201F038235N/AMIREILAPFERVTYVREDGNQAVYKVFRPTKHLFVNKKKDNGAXXXXXXXXMPDSGADERMGWRSFRFDRIASRKLTFV*
EsDRAFT_101567202F029747AGGMKYTLMLDTDTCTSFSTYPHTREGLDKALHHRGQKRSRDGFKCANIVSDRDGEVFVLDMSLAIN*

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