Basic Information | |
---|---|
Taxon OID | 3300000893 Open in IMG/M |
Scaffold ID | AP72_2010_repI_A001DRAFT_1003478 Open in IMG/M |
Source Dataset Name | Forest soil microbial communities from Amazon forest - Pasture72 2010 replicate I A001 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 3193 |
Total Scaffold Genes | 5 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
Novel Protein Genes | 1 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (100.00%) |
Associated Families | 1 |
Taxonomy | |
---|---|
All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
---|
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Amazon Forest, Brazil |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Amazon forest, Fazenda Nova Vida, City of Ariquemes, State of Rondonia, Brazil | |||||||
Coordinates | Lat. (o) | -10.171667 | Long. (o) | -62.7875 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F060195 | Metagenome | 133 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
AP72_2010_repI_A001DRAFT_10034784 | F060195 | GAG | MPDSSRIARPLRTQSVRLRYKVVAYVVAWLAALFATNPSGKYWPLAYMFPLGLAAFFSRYWANTGGWGVFIGCIAVYLVHAWSYFRSRKLWSTLLLFGVLAILLLGNVSGCRAMLNTH* |
⦗Top⦘ |