NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold AP72_2010_repI_A001DRAFT_1011108

Scaffold AP72_2010_repI_A001DRAFT_1011108


Overview

Basic Information
Taxon OID3300000893 Open in IMG/M
Scaffold IDAP72_2010_repI_A001DRAFT_1011108 Open in IMG/M
Source Dataset NameForest soil microbial communities from Amazon forest - Pasture72 2010 replicate I A001
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)1561
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Amazon Forest, Brazil

Source Dataset Sampling Location
Location NameAmazon forest, Fazenda Nova Vida, City of Ariquemes, State of Rondonia, Brazil
CoordinatesLat. (o)-10.171667Long. (o)-62.7875Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001239Metagenome / Metatranscriptome740Y
F004912Metagenome / Metatranscriptome419N

Sequences

Protein IDFamilyRBSSequence
AP72_2010_repI_A001DRAFT_10111081F004912GGTGGVTPTSVVFGEDPSPTVGKYSCSVDNIVGLQTSSQTGTRFAGRIDADAQQKFFVTIEENKQLPEDRCFSADALDDLKKLRRGEKPGTNSKAHFLDPLMFFTACQAQFRLSTNGSPIDSLYHSDNLNIFRDEFSQFWIKNGLSYIWQFHDLKGNAYVAEGKCEKIN*
AP72_2010_repI_A001DRAFT_10111082F001239GGAGGMSSNEAGLLDAVAFIIGGQQEGAIPQGFETHWRRTVHGREIKYQSIGPYVGFGQANDQHRDSGHVRIGVTVTSPTKCVFKRVVTTEYSRGANRESFGDATSEVATLDFNKVRRFDIEDGDSPNVVIEGTGWMCKQGGCQDIVKIGISAPRQEEARAIESKRHAIDFIKKACPGLPRDR*
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