NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold WSSedL1B2DRAFT_1003991

Scaffold WSSedL1B2DRAFT_1003991


Overview

Basic Information
Taxon OID3300000894 Open in IMG/M
Scaffold IDWSSedL1B2DRAFT_1003991 Open in IMG/M
Source Dataset NameWetland microbial communities from Twitchell Island in the Sacramento Delta, sample from surface sediment Feb2011 Site L1 Bulk
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)1403
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Wetlands → Sediment → Wetland → Wetland Microbial Communities From Twitchell Island In The Sacramento Delta

Source Dataset Sampling Location
Location NameTwitchell Island in the Sacramento/San Joaquin Delta, CA
CoordinatesLat. (o)38.106796Long. (o)-121.646457Alt. (m)Depth (m)0 to .12
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F035352Metagenome / Metatranscriptome172Y

Sequences

Protein IDFamilyRBSSequence
WSSedL1B2DRAFT_10039912F035352GAGVPNYSKKPVLTNSDEEYLMLIEVSEEFERQKIDKTAREKSGNPAEIVLRNRLIRRNLNLSLIPDVTIQGSKIKNDLLLLKSGVDPNQKTYLSNQVKMVIEVKNNSVGGKTLENGKQEDPSKVMRVKFNELEATTNVRNFAVVVLSEMLLPPRTLYRWRFKEDVIGKENCKVFTLVARQTYPPGGLYIKSNIDDMLQKGQMKKTGELLALINYLKCL*

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