NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold OpTDRAFT_10003184

Scaffold OpTDRAFT_10003184


Overview

Basic Information
Taxon OID3300000928 Open in IMG/M
Scaffold IDOpTDRAFT_10003184 Open in IMG/M
Source Dataset NameMarine plume microbial communities from the Columbia River - 25 PSU
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Maryland
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1734
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Freshwater And Marine → Freshwater And Marine Microbial Communities From The Columbia River, Usa, Of Estuaries And Plumes Across Salinity Gradients

Source Dataset Sampling Location
Location NameColumbia River plume, coastal ocean
CoordinatesLat. (o)46.233Long. (o)-124.16Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F071133Metagenome / Metatranscriptome122N
F094928Metagenome / Metatranscriptome105Y

Sequences

Protein IDFamilyRBSSequence
OpTDRAFT_100031843F094928GAGGMVMTRADVNSWVQSYGGGQLRTFDKTVGIYVNAYVYASAGQTSYSRGQWYYHRFEYVNANNNTYNNYVDGTINTGNVMYPIDIVDTLEDLTRRTVDVIEGRLSNRTINAYYCHASCHSSCHSSRGRR*
OpTDRAFT_100031844F071133GAGGMSMQKSYCKQMRYSGPESLSPGDATKFDVLIQMEVLSGCEQACLGCFVDKNIDPAMNQQIIDRAKELTDGVLRTGLNLREFVIGPTDFFTAKNTESVLNNKTVQEIMREHTNARIAAPAKFDVATMERVQEIFNILDDEDKFRREMIIEF
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