Scaffold OpTDRAFT_10053417

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold OpTDRAFT_10053417

Scaffold OpTDRAFT_10053417

Overview

Basic Information
Taxon OID	3300000928 Open in IMG/M
Scaffold ID	OpTDRAFT_10053417 Open in IMG/M
Source Dataset Name	Marine plume microbial communities from the Columbia River - 25 PSU
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Maryland
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1854
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Freshwater And Marine → Freshwater And Marine Microbial Communities From The Columbia River, Usa, Of Estuaries And Plumes Across Salinity Gradients

Source Dataset Sampling Location
Location Name	Columbia River plume, coastal ocean
Coordinates	Lat. (^o)	46.233	Long. (^o)	-124.16	Alt. (m)		Depth (m)	1
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F008495	Metagenome / Metatranscriptome	332	N
F020694	Metagenome / Metatranscriptome	222	N

Sequences

Protein ID	Family	RBS	Sequence
OpTDRAFT_100534172	F008495	GGA	MFECLPEYHGLFAMVDYCKPLYPQNDHSGFHRIINLQIWPDLHEDFCASELGWSDYVYGLFPEGKDIDRQIVLNSPAIVTPPELKSWVLCFPTGYSQDKKIDVRDVITIAHQVANGRPVLCAGKAAHGMAEFESIEYMCAYIRDANEVVTINTSTSILASALRKSWVHIADSPKHDFTHPNQRRIERKF*
OpTDRAFT_100534173	F020694	N/A	VGLLDIFTNDLSAIMNELPLAVTFGERNFLANRTTYKRDNSLADGGFMDSASMTITAVYDAFVQTISLGDVLVIGGRRFRVTSAELSQDAVSVDFSLEDINK*

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