Scaffold BpDRAFT

Basic Information
Taxon OID	3300000930 Open in IMG/M
Scaffold ID	BpDRAFT_10004618 Open in IMG/M
Source Dataset Name	Marine microbial communities from the coastal margin of the Columbia River, USA - 33 PSU, 16m
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Maryland
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300000930 Open in IMG/M

Scaffold ID

BpDRAFT_10004618 Open in IMG/M

Source Dataset Name

Marine microbial communities from the coastal margin of the Columbia River, USA - 33 PSU, 16m

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

University of Maryland

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	11380
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (57.14%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Scaffold Components

Scaffold Length (bps)

11380

Total Scaffold Genes

7 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

4 (57.14%)

Novel Protein Genes

1 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium TMED194	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium TMED194

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Freshwater And Marine → Freshwater And Marine Microbial Communities From The Columbia River, Usa, Of Estuaries And Plumes Across Salinity Gradients

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Freshwater And Marine → Freshwater And Marine Microbial Communities From The Columbia River, Usa, Of Estuaries And Plumes Across Salinity Gradients

Source Dataset Sampling Location
Location Name	Columbia River plume, coastal ocean
Coordinates	Lat. (^o)	46.233	Long. (^o)	-124.16	Alt. (m)	Depth (m)	16
Location on Map

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Source Dataset Sampling Location

Location Name

Columbia River plume, coastal ocean

Coordinates

Lat. (^o)

46.233

Long. (^o)

-124.16

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F074945	Metagenome / Metatranscriptome	119	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
BpDRAFT_100046181	F074945	N/A	QVEPSAAAFAHLGDCAKLIVQDIDIAGLKSSGNAETQNVLGANAGAEVGGITEELFDITSTAITSGTMLMAPTQVFPSPESFDAANQRAFAEIEAVKGSISTGLLAYLSEFFQVLPYSETKCRRDTGFIIDAISHDIQYGGNAATVQTAGMYFENAVNTGLQIEQRMGTRDAFLHLAKIVEHVVGAKSITTTLFPRLKTYYTGDILTQYEYWNGIPSYSNTAQDMAVVGANPDTCIAARKLTEIVANAVDDNIETRNTIPERIDVLQTWMSDSFITSKETVERRSDILAESIITYLSNTWNALSFPDAKCRRDIGYIIDSISHDIQHDTNFATLQSAGIYFENGVSVLPVDTKVQYADILSLLGDVVEQVVQEIAVTNASLYTLTPQNLLGTAATATEGTAVHDLVGLIENVVRKDDTDELARPVSTATWIDAELTAAANKIVDNTEELASDVTQFINSSFKVLDYSKAKCRRDTGYLLDAFSFDLNFGGNTASRWNADFYFWNSIYRLPEDQRNPTAKSYRQLGKICKDIVLGEYAGQSVLGEVGTSIESTKVEGLANIFYETQLYNDTKYLPVLIEPDYAYSSVTFTDAQNIIGQRREGLQKDTVRHVNSAYNFIDVNLTRRDARNLLTAVYNDFAYDKFNPGVAAPTYADNGSQNAVRTFTASFFNYDGTHVFPVFNPSDSTLGLKYKGSVNSVADLSTITGQKPKWSYIVATDYATNFYAGDIYYWNGSAWVGAGTNNTDLLDAFAGAWTRMKTYINTNLSPDLEHENMVTGLFDDCLLDNILRPETLIFGSLVESIAHQFNGASAGVNRNALPLNFRNLGQAISAIASVLNEDGGRIRWSGADELNNQYFARGLRINGRTGRIEGRPFTSSVRKLARRASNSRAVV*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold BpDRAFT_10004618

Overview

Ecosystem & Geography

Associated Families

Sequences