Scaffold BpDRAFT_10109786

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold BpDRAFT_10109786

Scaffold BpDRAFT_10109786

Overview

Basic Information
Taxon OID	3300000930 Open in IMG/M
Scaffold ID	BpDRAFT_10109786 Open in IMG/M
Source Dataset Name	Marine microbial communities from the coastal margin of the Columbia River, USA - 33 PSU, 16m
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Maryland
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	6133
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (81.82%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Freshwater And Marine → Freshwater And Marine Microbial Communities From The Columbia River, Usa, Of Estuaries And Plumes Across Salinity Gradients

Source Dataset Sampling Location
Location Name	Columbia River plume, coastal ocean
Coordinates	Lat. (^o)	46.233	Long. (^o)	-124.16	Alt. (m)		Depth (m)	16
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F051153	Metagenome / Metatranscriptome	144	N

Sequences

Protein ID	Family	RBS	Sequence
BpDRAFT_101097866	F051153	N/A	MPNKPTAATIHTELQVHIKENEERWKTNFKQLDKLEEQIARLQWWIIGGVSSIGISLFTLILTFLIRMNY*

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