NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold BpDRAFT_10176207

Scaffold BpDRAFT_10176207


Overview

Basic Information
Taxon OID3300000930 Open in IMG/M
Scaffold IDBpDRAFT_10176207 Open in IMG/M
Source Dataset NameMarine microbial communities from the coastal margin of the Columbia River, USA - 33 PSU, 16m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Maryland
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1534
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Freshwater And Marine → Freshwater And Marine Microbial Communities From The Columbia River, Usa, Of Estuaries And Plumes Across Salinity Gradients

Source Dataset Sampling Location
Location NameColumbia River plume, coastal ocean
CoordinatesLat. (o)46.233Long. (o)-124.16Alt. (m)Depth (m)16
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F045425Metagenome153N

Sequences

Protein IDFamilyRBSSequence
BpDRAFT_101762074F045425N/AMADGTPYSARWTGPTLITKSHDTTVTVDIEHGGSAPTVSAVTFSLYSPNGTAIVDGAAASESGGTLSYTVTAASMSSQAYAQGWAVKFSATIGGDVHDFYNDAAVCLARLYCPIGTTDLTNRYSRLAALQTTGASDLQKFVTDAWTELTARLYSEALPFWRMRTPSSLRPWLIAQAAVFALDDLALTLGDGGPYREEARRIEE

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