NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold BpDRAFT_10323687

Scaffold BpDRAFT_10323687


Overview

Basic Information
Taxon OID3300000930 Open in IMG/M
Scaffold IDBpDRAFT_10323687 Open in IMG/M
Source Dataset NameMarine microbial communities from the coastal margin of the Columbia River, USA - 33 PSU, 16m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Maryland
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)875
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Freshwater And Marine → Freshwater And Marine Microbial Communities From The Columbia River, Usa, Of Estuaries And Plumes Across Salinity Gradients

Source Dataset Sampling Location
Location NameColumbia River plume, coastal ocean
CoordinatesLat. (o)46.233Long. (o)-124.16Alt. (m)Depth (m)16
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026890Metagenome / Metatranscriptome196Y

Sequences

Protein IDFamilyRBSSequence
BpDRAFT_103236871F026890GGAGMQYNIYQIKVTDEIHDYVNSNEGGHTGAAKKYPLYHAKMETMHGRGDDRKVNFKTEYFSHYTKVCEVDGRYNGLSNGDMDYTVKSKNEVFAILNQQYLDEDTMEDIVFDSHVSGFTMKSFVRDGKTIEYRNMHSLSVGDIIAEVPQVGYEVMDPSDIVKQTTYHMVDSYGFSDITNIISNSDIAVNXXXXAV*
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