Scaffold BpDRAFT_10566640

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold BpDRAFT_10566640

Scaffold BpDRAFT_10566640

Overview

Basic Information
Taxon OID	3300000930 Open in IMG/M
Scaffold ID	BpDRAFT_10566640 Open in IMG/M
Source Dataset Name	Marine microbial communities from the coastal margin of the Columbia River, USA - 33 PSU, 16m
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Maryland
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	672
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Freshwater And Marine → Freshwater And Marine Microbial Communities From The Columbia River, Usa, Of Estuaries And Plumes Across Salinity Gradients

Source Dataset Sampling Location
Location Name	Columbia River plume, coastal ocean
Coordinates	Lat. (^o)	46.233	Long. (^o)	-124.16	Alt. (m)		Depth (m)	16
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F067762	Metagenome / Metatranscriptome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
BpDRAFT_105666403	F067762	N/A	MYCSECNKIVIADQVKYFTPDHNNVFCDAYCSNAWYSKTFEKLDAKKDQTGDEHDE*

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