NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold BBAY92_10003172

Scaffold BBAY92_10003172


Overview

Basic Information
Taxon OID3300000947 Open in IMG/M
Scaffold IDBBAY92_10003172 Open in IMG/M
Source Dataset NameMacroalgal surface ecosystem from Botany Bay, Sydney, Australia - BBAY92
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterJ. Craig Venter Institute (JCVI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4223
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (30.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Algae → Green Algae → Ectosymbionts → Unclassified → Macroalgal Surface → Macroalgal Surface Microbial Communities

Source Dataset Sampling Location
Location NameBotany Bay, Sydney, NSW, Australia
CoordinatesLat. (o)-33.966629Long. (o)151.166614Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012872Metagenome / Metatranscriptome276Y
F013704Metagenome / Metatranscriptome269Y
F014505Metagenome / Metatranscriptome262Y
F025860Metagenome / Metatranscriptome200Y

Sequences

Protein IDFamilyRBSSequence
BBAY92_100031722F014505AGGAMDRIEKFYRKNFKRLTGFIKEYTDGSYEIASDIVQMVFLRLLEMESEGRTNFYEEDSLNFFYVYRASINTALKYQRAKKKINKVSLDDLEIEIEESIEDKEAMEKMILIMDQEMSDLHWYDEKMMRIYMEGTSMNKIHRETDIGLTSIKNTIKNGKARIYDRLREDWEDFQNGDYDQI*
BBAY92_100031725F013704AGTAGMDFKRKMGNGQRFRIAGMEFICIETHAYLQTRVDGEESDIDVGSSYYIVRNTSTGSLHRIPFQKIIDKEKEIEWKN*
BBAY92_100031726F012872N/AMDLHFEGNKLYYMEKEAELYRALNYVSKELGNQEAMTTEQMWEVFNILMDTTNVYRHITDYFTTLDKAILDARIKNGKLKQELYDYKKENERLQRIVDEHIDGF*
BBAY92_100031729F025860GAGMNTENIYQVIDDIEGFAERIGSAWLKEKAAMLEAHLAVLENQSNK*
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Institute for Fundamental Biomedical Research
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