Scaffold JGI11881J13070_1007071

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold JGI11881J13070_1007071

Scaffold JGI11881J13070_1007071

Overview

Basic Information
Taxon OID	3300000950 Open in IMG/M
Scaffold ID	JGI11881J13070_1007071 Open in IMG/M
Source Dataset Name	Marine microbial communities from the Deep Atlantic Ocean - MP0441
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	968
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location Name	East of Rio de Janeiro, Brazil, South Atlantic Ocean
Coordinates	Lat. (^o)	-22.97	Long. (^o)	-36.95	Alt. (m)		Depth (m)	3906.8
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F006423	Metagenome	373	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI11881J13070_10070711	F006423	N/A	DPSKDNTEKYVANDGDYWYVGRVGMKGGSSFLKFVAAHGKDSYFESGKLKKVTPKEIEKDATKSPSIINTVDFKKLYKK*

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