NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI11615J12901_10255689

Scaffold JGI11615J12901_10255689


Overview

Basic Information
Taxon OID3300000953 Open in IMG/M
Scaffold IDJGI11615J12901_10255689 Open in IMG/M
Source Dataset NameSoil microbial communities from Great Prairies - Kansas Corn soil
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)839
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Soil Microbial Communities From Great Prairies (Kansas, Wisconsin And Iowa)

Source Dataset Sampling Location
Location NameKansas, USA
CoordinatesLat. (o)39.211666Long. (o)-96.594768Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F036462Metagenome / Metatranscriptome170Y

Sequences

Protein IDFamilyRBSSequence
JGI11615J12901_102556891F036462N/ALLGNENEADYRNFDLTEIQQVLDNLRDIDAIDLAHAELLQQQALRGADILTEYLSKMVKTVGYLEAKVQSTKNKVSLEYQAPDGSRTTLDMKKWAGESSPEVEAVQIKLAEAKGSKLFLERKYEILIKSHHHFKDIAAGLRRTILGYSSGTPSDKVPEGYE*
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