NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI11615J12901_10557338

Scaffold JGI11615J12901_10557338


Overview

Basic Information
Taxon OID3300000953 Open in IMG/M
Scaffold IDJGI11615J12901_10557338 Open in IMG/M
Source Dataset NameSoil microbial communities from Great Prairies - Kansas Corn soil
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)865
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Soil Microbial Communities From Great Prairies (Kansas, Wisconsin And Iowa)

Source Dataset Sampling Location
Location NameKansas, USA
CoordinatesLat. (o)39.211666Long. (o)-96.594768Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F096887Metagenome104N

Sequences

Protein IDFamilyRBSSequence
JGI11615J12901_105573381F096887N/ALGIGIRVMVQNDYRILANLRSSTHSFYYSVAGIEWSKHEIAELDIFPPAPANQMQSFANGAFDVRFSLPAVTGPLAARLTVRSTGAVDNATHVIEAQLTKAYELSDAALAVRGNPARAVLSGGEILISGTDHDQTNGTLRSGAKPRLAISASSEIVRGLLSQSIENPEILDRASLAPLVGQSDYLPASFLNQLAGDLCSVPRALLHPISTTGSLTVSNQIWGSQSSPEVHCVDGLSASGDSINISGDVSGAGILVVRNADLVLSGSFHWQGLIVVNGQEVGLRTAGSS
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