Basic Information | |
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Taxon OID | 3300000956 Open in IMG/M |
Scaffold ID | JGI10216J12902_101056262 Open in IMG/M |
Source Dataset Name | Soil microbial communities from Great Prairies - Kansas, Native Prairie soil |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2279 |
Total Scaffold Genes | 5 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (40.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Soil Microbial Communities From Great Prairies (Kansas, Wisconsin And Iowa) |
Source Dataset Sampling Location | ||||||||
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Location Name | Kansas, USA | |||||||
Coordinates | Lat. (o) | 39.214012 | Long. (o) | -96.585283 | Alt. (m) | Depth (m) | Location on Map | |
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Family | Category | Number of Sequences | 3D Structure? |
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F030494 | Metagenome | 185 | Y |
F035366 | Metagenome | 172 | Y |
F060113 | Metagenome | 133 | Y |
Protein ID | Family | RBS | Sequence |
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JGI10216J12902_1010562621 | F035366 | N/A | TNKNDANKAAVLERLSSVRSALEKQPQNPSVARALEQCGRLELAITQFHAEGLRFAAFTLFRMVFAQGTVFTEPVQIATQDLKSALDAAGYPH* |
JGI10216J12902_1010562622 | F030494 | AGG | MERVVPGARDAARRQADLVGTPVFWLTIAVTLCALVPLGLFPRMRAWLGCAVLLMWTCFFSANAVRSRRTHSIISAPVYLLAAALLAGTAWGWVAVDVWMVWLLGAGIIAANLSERFVGRYL* |
JGI10216J12902_1010562623 | F060113 | N/A | MIWFFERPGERLQCEIRQSASGSGFELVWTSSDGRIHVELSNDASELIRRRRALEHWLKLDGWIRPGRITPVRPPRPERTRKTDVQLH* |
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