NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI12648J13191_1000831

Scaffold JGI12648J13191_1000831


Overview

Basic Information
Taxon OID3300001084 Open in IMG/M
Scaffold IDJGI12648J13191_1000831 Open in IMG/M
Source Dataset NameForest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_O1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3985
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location NameThunder Bay, Ontario, Canada
CoordinatesLat. (o)49.08Long. (o)-89.38Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F090675Metagenome / Metatranscriptome108Y

Sequences

Protein IDFamilyRBSSequence
JGI12648J13191_10008311F090675GGAGGMFDSVLPAESEPISVVSSRWLWAARVFALIYAISLAGEYVAADHFDPLNSLVGFLFTFGLRSLLSLVLLYFLFRSGKKSLAFALGLGAATAFIALFGVASTALFWPLGRSFNLSLALIIFGPIAPPFVDMMHQPNPQLGTEGSLLFWSFGICSAVLGLSSVVTFRKVAHETKGMGGLRFAFRAGICCPLVVWLIFMLLIFIWLAAGGGIHI*
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