Scaffold SHO09A_104562

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold SHO09A_104562

Scaffold SHO09A_104562

Overview

Basic Information
Taxon OID	3300001093 Open in IMG/M
Scaffold ID	SHO09A_104562 Open in IMG/M
Source Dataset Name	07SHO09A
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	780
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Thermal Spring → Thermal Spring Microbial Communities From Shoshone Spring, Yellowstone National Park

Source Dataset Sampling Location
Location Name	Shoshone Yellowstone National Park
Coordinates	Lat. (^o)	44.3564059	Long. (^o)	-110.7977012	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F043237	Metagenome / Metatranscriptome	156	Y

Sequences

Protein ID	Family	RBS	Sequence
SHO09A_1045622	F043237	N/A	KNSPEESGMELERTARYIAQLSSRGYKYAVVGRLTRYDKKIVKKLEYEGFVFYLCRFQTKKEVVEYCLERAEGTFRVYCLASKPLEFPNAPLKLHYDEKTKRLRLLAKRSFINECLKVIERASSLKYPNHKLYTAKVNEALRNLYSILAYTYNDKERIRAIKRKVKHLFVSALKENYGIEPKKAMEDYRRFVVKFSDVLKKKQRANSSTS*

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