Scaffold JGI11944J13513_1000465

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold JGI11944J13513_1000465

Scaffold JGI11944J13513_1000465

Overview

Basic Information
Taxon OID	3300001096 Open in IMG/M
Scaffold ID	JGI11944J13513_1000465 Open in IMG/M
Source Dataset Name	Wastewater bioreactor microbial communities from Singapore -Terephthalate degrading community TA Sludge
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Scaffold Components
Scaffold Length (bps)	39598
Total Scaffold Genes	46 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	28 (60.87%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Bioremediation → Terephthalate → Wastewater → Unclassified → Wastewater Bioreactor → Wastewater Bioreactor Microbial Communities From Singapore And Univ Of Illinois At Urbana, That Are Terephthalate-Degrading

Source Dataset Sampling Location
Location Name	National University of Singapore, Singapore
Coordinates	Lat. (^o)	1.29973	Long. (^o)	103.771791	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F029922	Metagenome / Metatranscriptome	187	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI11944J13513_10004655	F029922	AGGA	LAKSIDVLDKRMISGLPTLSREELYNFNIIELSEMIMAIEHAIRYTEGYRFLLLCFGNEGSSDKAKMIMKGMEDYLELVKDVYRFKVNEKKKRTAFLKGEIY*

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