NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI11944J13513_1006238

Scaffold JGI11944J13513_1006238


Overview

Basic Information
Taxon OID3300001096 Open in IMG/M
Scaffold IDJGI11944J13513_1006238 Open in IMG/M
Source Dataset NameWastewater bioreactor microbial communities from Singapore -Terephthalate degrading community TA Sludge
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)6150
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Bioremediation → Terephthalate → Wastewater → Unclassified → Wastewater Bioreactor → Wastewater Bioreactor Microbial Communities From Singapore And Univ Of Illinois At Urbana, That Are Terephthalate-Degrading

Source Dataset Sampling Location
Location NameNational University of Singapore, Singapore
CoordinatesLat. (o)1.29973Long. (o)103.771791Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F057477Metagenome / Metatranscriptome136Y
F103516Metagenome / Metatranscriptome101N

Sequences

Protein IDFamilyRBSSequence
JGI11944J13513_10062382F103516GGAGGMQTVLILFFAALLAGCGAATNVQVMKPVNGEIHSFLTPELQKSRCYNFLSAGREGEMIAKKSNVLLNECNLTAKDAVDRVIYLTYTTRDAYVAESGENQVISKRVMGNKDIEIESRLFYEKEGGVRGIQVLINDFVDTGYVRGYEPEWVVRALYREVKLQDGKIVVVRDGMTKEEFMKEDEIEHYKKLNRMLQEKK*
JGI11944J13513_10062384F057477N/AMKDKDCITGDPDMTTPKLKDSSSTALLALAVLFLAPGLSILSPDGRFFFLVPAGLVSAVVAIAAPSGRKRAAALIGLCVAVVMAIQAWPEVKSLDAAGKGHTTRPAVQGR*
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