NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGIcombinedJ13537_10029877

Scaffold JGIcombinedJ13537_10029877


Overview

Basic Information
Taxon OID3300001097 Open in IMG/M
Scaffold IDJGIcombinedJ13537_10029877 Open in IMG/M
Source Dataset NameSaline microbial communities from Lake Vida, Antarctica (Lake Vida Brine Hole Two - Combined Assembly 2 samples, Mar 2013 Assem)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1548
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Unclassified → Hypersaline → Hypersaline Microbial Communities From Lake Vida, Antarctica

Source Dataset Sampling Location
Location NameLake Vida, Antarctica
CoordinatesLat. (o)-77.38861Long. (o)161.931111Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009265Metagenome / Metatranscriptome320Y
F029096Metagenome189Y

Sequences

Protein IDFamilyRBSSequence
JGIcombinedJ13537_100298772F009265AGGMKYEVTTKQGNNYIVSDDSAWLWIELERELGVTVTQAAEKMSQGSLDVITCMLFKAARQQGKTELKTQRLWVENEFESFDVVDEPDPKENSPTGSSK*
JGIcombinedJ13537_100298773F029096AGGAMPEPRTTIKIQPDMTDLRGLLKALNEMDKDSQKGLKDEVYSISAWTAQRIQAAAVGHPYMPLQAAVIVQTVRASRDRLPTVLIGGSKGRASGGANAGQLLFGNEFGGERNAFGNKTSFPNGGYRFPIRSDRVGRGNAGYWIFPTLKGAQRDITQQWKNAVEKVYDNWKRGI*
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