Scaffold JGI12627J13344_100375

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold JGI12627J13344_100375

Scaffold JGI12627J13344_100375

Overview

Basic Information
Taxon OID	3300001116 Open in IMG/M
Scaffold ID	JGI12627J13344_100375 Open in IMG/M
Source Dataset Name	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM2H0_M2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	8948
Total Scaffold Genes	10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (80.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location Name	Davy Crockett National Forest, Groveton, Texas, USA
Coordinates	Lat. (^o)	31.11	Long. (^o)	-95.15	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F050762	Metagenome / Metatranscriptome	145	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI12627J13344_10037510	F050762	AGGA	MKLHKYVTLIMVAIALTVATSNAQVKQNLTDQQLTDLLGRIDTSTDSFAKAADKAMDKSGFNNSSREDDLNNILKKLRSTTEELKNDHSGPNTKSNLTTVLHYGVSIENFLKRNPLDGVQDEWTTLRSDLGELATGFNITWDQGHAVGAPIGEADIKNLCQHIEDMADKYKLTLDAALDKSALNNTKAEDEINAVNADFRKATRTLEDNRTKDSAAQDAKDVLVKGKRINDFLEKHSAKLTPEVQSAWAAVRTDLDRLARLYAIQWQWQ*

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