Basic Information | |
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Taxon OID | 3300001151 Open in IMG/M |
Scaffold ID | JGI12713J13577_1000013 Open in IMG/M |
Source Dataset Name | Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O3 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 103245 |
Total Scaffold Genes | 116 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 93 (80.17%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Algoma, Ontario, Canada | |||||||
Coordinates | Lat. (o) | 46.42 | Long. (o) | -83.37 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F018036 | Metagenome / Metatranscriptome | 237 | Y |
F022236 | Metagenome / Metatranscriptome | 215 | Y |
F078988 | Metagenome / Metatranscriptome | 116 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
JGI12713J13577_100001332 | F018036 | AGTAG | MSETLADVCGKCGAAIDANRRVDFTLKDGTRVCDSCFVRETPRPKSNRLD* |
JGI12713J13577_100001337 | F022236 | AGG | MPSVHELERTSSAELAAMCQRVADNPGAYLQEAADEASKLKLEWDTLQTYPNPNYAVQKKIEQQKDHLAKRMIEFLTRIL* |
JGI12713J13577_100001348 | F078988 | AGGA | MSRQTVPSNLSTALAEFGSQRAERIASQLSIEVCGFDRCGRFFTERSETCDVSDAGCKFYLRTEVEREAVVALRVITRSDRRGSVAAAVLFQVAHMERGSSGWTLGAWKLRAEDSWPVPGVQARDGAASFE* |
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