NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI12704J13340_1000329

Scaffold JGI12704J13340_1000329


Overview

Basic Information
Taxon OID3300001170 Open in IMG/M
Scaffold IDJGI12704J13340_1000329 Open in IMG/M
Source Dataset NameForest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_O2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7767
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (76.92%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location NameThunder Bay, Ontario, Canada
CoordinatesLat. (o)49.08Long. (o)-89.38Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F037323Metagenome / Metatranscriptome168Y
F039385Metagenome / Metatranscriptome164Y
F079296Metagenome / Metatranscriptome116Y

Sequences

Protein IDFamilyRBSSequence
JGI12704J13340_10003293F039385AGGAGGMTNEQTKALAAVRAAFVAAETTGLTEAEIGKAAVTGLVLPEVKSGRPPGNYNPIADGPDKQKGKAQHG*
JGI12704J13340_10003297F079296AGGAGVIENNWWGLYRAAVLEIDRNKLRDRVLVAEDAIRARASLGGLVSREERISLQDAMGALLVLRRELGHSRVDNKFK*
JGI12704J13340_10003299F037323N/AMPTQTRIKTKATPQEAVELKNLLPVLARFVENGKVSIRLGPVADVKDWLNNYQAFEKTPIVTMDAGSVRLVGTELQFDCGLDDYAA*
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