NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI12695J13573_1000117

Scaffold JGI12695J13573_1000117


Overview

Basic Information
Taxon OID3300001180 Open in IMG/M
Scaffold IDJGI12695J13573_1000117 Open in IMG/M
Source Dataset NameForest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11268
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (54.55%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location NameThunder Bay, Ontario, Canada
CoordinatesLat. (o)49.08Long. (o)-89.38Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005402Metagenome / Metatranscriptome402Y
F026940Metagenome / Metatranscriptome196Y

Sequences

Protein IDFamilyRBSSequence
JGI12695J13573_100011711F026940N/AVARTTRVYLTERTPAVLRLDDGSRVPGKLKVVSLTGGLLSVTRPVETGSSAKVMFLTGAGMVLGAAKMLSPLSWELQPFRFVSLTCGDHERLKTTIQQSIDRKRTHHVQIERSRAW*
JGI12695J13573_10001175F005402GGAGGMKIKLWTIVRIASLLASVVTLVLVLKKPEPVAPPQTRAAVAANAQSFEEKMQQLAQAAPSPPSSGGYQIIASSDPGTISQPKSEVRLTSQEVGAALAQSTGADLSPNSNVGAGAPAIKDQRVSFEGDIVRGQFLTEIAGKDVWVTVSGHLGSKDGYATFDPTEFKVGDLAVPVSLVNPSLQKKLAEQRDQLKLPDYIGDIRVENGDLVIQRR*
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