NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold BBAY88_1081503

Scaffold BBAY88_1081503


Overview

Basic Information
Taxon OID3300001183 Open in IMG/M
Scaffold IDBBAY88_1081503 Open in IMG/M
Source Dataset NameMacroalgal surface ecosystem from Botany Bay, Sydney, Australia - BBAY88
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterJ. Craig Venter Institute (JCVI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)502
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Algae → Green Algae → Ectosymbionts → Unclassified → Macroalgal Surface → Macroalgal Surface Microbial Communities

Source Dataset Sampling Location
Location NameBotany Bay, Sydney, NSW, Australia
CoordinatesLat. (o)-33.966629Long. (o)151.166614Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013637Metagenome / Metatranscriptome269Y
F051180Metagenome / Metatranscriptome144N

Sequences

Protein IDFamilyRBSSequence
BBAY88_10815031F013637N/AHGKETYFKIKALERQRKMQDYVYVWFKHRNHSEKMWVRITKGSRLKGEGTLDNVPKVLTKLQHRQMVKFKTDVEGITWGR*
BBAY88_10815032F051180GGAGGMGTIKEWLKKGEQDELFLISDIAKHGCSGGVPGLTYYVDTTAFYNDHEADVWKQVRHAADAAGESVFYLLDKDIRGPTAFKNSMVWLAVE

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