NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold BBAY72_10069021

Scaffold BBAY72_10069021


Overview

Basic Information
Taxon OID3300001202 Open in IMG/M
Scaffold IDBBAY72_10069021 Open in IMG/M
Source Dataset NameMacroalgal surface ecosystem from Botany Bay, Sydney, Australia - BBAY72
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterJ. Craig Venter Institute (JCVI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1136
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Algae → Green Algae → Ectosymbionts → Unclassified → Macroalgal Surface → Macroalgal Surface Microbial Communities

Source Dataset Sampling Location
Location NameBotany Bay, Sydney, NSW, Australia
CoordinatesLat. (o)-33.966629Long. (o)151.166614Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F091624Metagenome107Y
F105197Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
BBAY72_100690212F091624N/AMTHYDICRLRAQHFATDELVEMIDKLDKATLIAEEFATFRALKDEYESRWNNQENYNRLRSDAKMGGSFNAAIIESFFKADNNNKPRLVEAFPEIFIP*
BBAY72_100690214F105197N/AMTDEQINARIAELRAKPLLKCDEAEIRELISYYDDQQLREIQVNLHKHIRSIERKKKHFAEYWRCKDILKWAQQEECSRPITSDFLNSVFKTS*

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