Scaffold JGIcombinedJ13530_104374610

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold JGIcombinedJ13530_104374610

Scaffold JGIcombinedJ13530_104374610

Overview

Basic Information
Taxon OID	3300001213 Open in IMG/M
Scaffold ID	JGIcombinedJ13530_104374610 Open in IMG/M
Source Dataset Name	Combined assembly of wetland microbial communities from Twitchell Island in the Sacramento Delta (Jan 2013 JGI Velvet Assembly)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Scaffold Components
Scaffold Length (bps)	5602
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (71.43%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Wetlands → Sediment → Wetland → Wetland Microbial Communities From Twitchell Island In The Sacramento Delta

Source Dataset Sampling Location
Location Name	Twitchell Island in the Sacramento/San Joaquin Delta, CA
Coordinates	Lat. (^o)	38.107057	Long. (^o)	-121.647578	Alt. (m)		Depth (m)	0 to .12
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F085037	Metagenome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
JGIcombinedJ13530_1043746106	F085037	N/A	LTALDFAAKHRLMIALFALLVAVDAGTPAATNAATMPTQVTAPTLRDAKAVLADYATAIGDEKLWKNHKCVRVKREVAVKAMQFVSQEQTRVCKGSKILGESQMPGMGLFRRGSDGRTAWAEDPIGGLRILKDAEAEDVQIGAAWNSEWHLGEVYAKIVSVPPPKAAPADRSLECVGLDKKKGQPTTLCFDGASHLRVWEQGVQASQGGLVPYVTRFSDWRPVDGVKVWHHEVVTVGPVTMEGQIVELKFDEPMSPSLFALPRKK*

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